HL_5UYL_100

3D structure

PDB id

5UYL (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAUCAGAAUGC

Length

11 nucleotides

Bulged bases

5UYL|1|A|U|1364

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYL_100 not in the Motif Atlas

Homologous match to HL_4LFB_030

Geometric discrepancy: 0.1724

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86432.1

Basepair signature

cWW-tWH-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

5UYL|1|A|G|1356
5UYL|1|A|A|1357
5UYL|1|A|U|1358
5UYL|1|A|C|1359
5UYL|1|A|A|1360
5UYL|1|A|G|1361
5UYL|1|A|A|1362
5UYL|1|A|A|1363
5UYL|1|A|U|1364
5UYL|1|A|G|1365
5UYL|1|A|C|1366

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain I

30S ribosomal protein S9

Chain J

30S ribosomal protein S10

Chain N

30S ribosomal protein S14