HL_5UYM_012

3D structure

PDB id

5UYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5UYM|1|01|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYM_012 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.099

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5UYM|1|01|G|410
5UYM|1|01|G|411
5UYM|1|01|A|412
5UYM|1|01|C|413
5UYM|1|01|C|414
5UYM|1|01|A|415
5UYM|1|01|U|416
5UYM|1|01|C|417

Current chains

Chain 01

23S ribosomal RNA

Nearby chains