3D structure

PDB id
5UYM (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
UGUCGAAAAA
Length
10 nucleotides
Bulged bases
5UYM|1|01|C|747, 5UYM|1|01|A|751, 5UYM|1|01|A|752
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5UYM_021 not in the Motif Atlas
Homologous match to HL_4WF9_023
Geometric discrepancy: 0.1063
The information below is about HL_4WF9_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_88205.2
Basepair signature
cWW-cWS-tSW-F-F
Number of instances in this motif group
7

Unit IDs

5UYM|1|01|U|744
5UYM|1|01|G|745
5UYM|1|01|U|746
5UYM|1|01|C|747
5UYM|1|01|G|748
5UYM|1|01|A|749
5UYM|1|01|A|750
5UYM|1|01|A|751
5UYM|1|01|A|752
5UYM|1|01|A|753

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 05
50S ribosomal protein L3
Chain 21
50S ribosomal protein L22
Chain 30
50S ribosomal protein L32
Chain 32
50S ribosomal protein L34

Coloring options:


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