HL_5UYM_021
3D structure
- PDB id
- 5UYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGUCGAAAAA
- Length
- 10 nucleotides
- Bulged bases
- 5UYM|1|01|C|747, 5UYM|1|01|A|751, 5UYM|1|01|A|752
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UYM_021 not in the Motif Atlas
- Homologous match to HL_4WF9_023
- Geometric discrepancy: 0.1063
- The information below is about HL_4WF9_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_88205.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 7
Unit IDs
5UYM|1|01|U|744
5UYM|1|01|G|745
5UYM|1|01|U|746
5UYM|1|01|C|747
5UYM|1|01|G|748
5UYM|1|01|A|749
5UYM|1|01|A|750
5UYM|1|01|A|751
5UYM|1|01|A|752
5UYM|1|01|A|753
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 05
- 50S ribosomal protein L3
- Chain 21
- 50S ribosomal protein L22
- Chain 30
- 50S ribosomal protein L32
- Chain 32
- 50S ribosomal protein L34
Coloring options: