HL_5UYM_039

3D structure

PDB id

5UYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5UYM|1|01|A|1614, 5UYM|1|01|A|1616, 5UYM|1|01|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYM_039 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.0851

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5UYM|1|01|C|1612
5UYM|1|01|G|1613
5UYM|1|01|A|1614
5UYM|1|01|C|1615
5UYM|1|01|A|1616
5UYM|1|01|C|1617
5UYM|1|01|A|1618
5UYM|1|01|G|1619

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L22

Chain 32

50S ribosomal protein L34