HL_5UYM_049

3D structure

PDB id

5UYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

5UYM|1|01|A|2030, 5UYM|1|01|A|2031, 5UYM|1|01|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYM_049 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1321

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

5UYM|1|01|G|2027
5UYM|1|01|U|2028
5UYM|1|01|G|2029
5UYM|1|01|A|2030
5UYM|1|01|A|2031
5UYM|1|01|G|2032
5UYM|1|01|A|2033
5UYM|1|01|U|2034
5UYM|1|01|G|2035
5UYM|1|01|C|2036

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 05

50S ribosomal protein L3

Chain 20

50S ribosomal protein L21

Chain 30

50S ribosomal protein L32