HL_5UYM_069
3D structure
- PDB id
- 5UYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CAUGCCG
- Length
- 7 nucleotides
- Bulged bases
- 5UYM|1|02|G|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UYM_069 not in the Motif Atlas
- Geometric match to HL_7RQB_070
- Geometric discrepancy: 0.1795
- The information below is about HL_7RQB_070
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87939.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
5UYM|1|02|C|38
5UYM|1|02|A|39
5UYM|1|02|U|40
5UYM|1|02|G|41
5UYM|1|02|C|42
5UYM|1|02|C|43
5UYM|1|02|G|44
Current chains
- Chain 02
- 5S ribosomal RNA
Nearby chains
- Chain 01
- Large subunit ribosomal RNA; LSU rRNA
- Chain 07
- 50S ribosomal protein L5
- Chain 17
- 50S ribosomal protein L18
- Chain 29
- 50S ribosomal protein L31
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