HL_5UYM_105

3D structure

PDB id

5UYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with cognate ternary complex base-paired to A site codon, closed 30S (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

5UYM|1|X|C|16, 5UYM|1|X|G|18

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYM_105 not in the Motif Atlas

Homologous match to HL_1QF6_001

Geometric discrepancy: 0.159

The information below is about HL_1QF6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

5UYM|1|X|C|13
5UYM|1|X|A|14
5UYM|1|X|G|15
5UYM|1|X|C|16
5UYM|1|X|C|17
5UYM|1|X|U|17|||A
5UYM|1|X|G|18
5UYM|1|X|G|19
5UYM|1|X|U|20
5UYM|1|X|A|21
5UYM|1|X|G|22

Current chains

Chain X

tRNAfMet

Nearby chains

Chain 01

Large subunit ribosomal RNA; LSU rRNA

Chain 03

50S ribosomal protein L1