HL_5UYP_009

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

5UYP|1|01|A|311

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYP_009 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.2121

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

5UYP|1|01|C|305
5UYP|1|01|U|306
5UYP|1|01|G|307
5UYP|1|01|G|308
5UYP|1|01|A|309
5UYP|1|01|A|310
5UYP|1|01|A|311
5UYP|1|01|G|312

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 23

50S ribosomal protein L24