HL_5UYP_016
3D structure
- PDB id
- 5UYP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases
- 5UYP|1|01|A|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UYP_016 not in the Motif Atlas
- Homologous match to HL_5J7L_150
- Geometric discrepancy: 0.1266
- The information below is about HL_5J7L_150
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
5UYP|1|01|U|566
5UYP|1|01|U|567
5UYP|1|01|U|568
5UYP|1|01|U|569
5UYP|1|01|G|570
5UYP|1|01|U|571
5UYP|1|01|A|572
5UYP|1|01|U|573
5UYP|1|01|A|574
5UYP|1|01|A|575
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 05
- 50S ribosomal protein L3
- Chain 14
- 50S ribosomal protein L15
- Chain 19
- 50S ribosomal protein L20
- Chain 20
- 50S ribosomal protein L21
- Chain 30
- 50S ribosomal protein L32
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