HL_5UYP_026

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYP_026 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.242

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5UYP|1|01|G|978
5UYP|1|01|A|979
5UYP|1|01|A|980
5UYP|1|01|A|981
5UYP|1|01|C|982
5UYP|1|01|A|983
5UYP|1|01|A|984
5UYP|1|01|C|985

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 19

50S ribosomal protein L20

Chain 20

50S ribosomal protein L21

Chain 28

50S ribosomal protein L30