HL_5UYP_034

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5UYP|1|01|U|1396, 5UYP|1|01|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYP_034 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1936

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5UYP|1|01|G|1389
5UYP|1|01|U|1390
5UYP|1|01|U|1391
5UYP|1|01|A|1392
5UYP|1|01|A|1393
5UYP|1|01|U|1394
5UYP|1|01|A|1395
5UYP|1|01|U|1396
5UYP|1|01|U|1397
5UYP|1|01|C|1398

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 22

50S ribosomal protein L23