HL_5UYP_048

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

5UYP|1|01|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYP_048 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.1294

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

5UYP|1|01|G|1949
5UYP|1|01|G|1950
5UYP|1|01|U|1951
5UYP|1|01|A|1952
5UYP|1|01|A|1953
5UYP|1|01|G|1954
5UYP|1|01|U|1955
5UYP|1|01|U|1956
5UYP|1|01|C|1957

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 13

50S ribosomal protein L14

Chain A

Small subunit ribosomal RNA; SSU rRNA