HL_5UYP_052
3D structure
- PDB id
- 5UYP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUGGGGCGG
- Length
- 9 nucleotides
- Bulged bases
- 5UYP|1|01|G|2250
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UYP_052 not in the Motif Atlas
- Homologous match to HL_7RQB_053
- Geometric discrepancy: 0.114
- The information below is about HL_7RQB_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5UYP|1|01|C|2248
5UYP|1|01|U|2249
5UYP|1|01|G|2250
5UYP|1|01|G|2251
5UYP|1|01|G|2252
5UYP|1|01|G|2253
5UYP|1|01|C|2254
5UYP|1|01|G|2255
5UYP|1|01|G|2256
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 15
- 50S ribosomal protein L16
- Chain 25
- 50S ribosomal protein L27
- Chain W
- Transfer RNA; tRNA
Coloring options: