HL_5UYP_060

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

5UYP|1|01|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYP_060 not in the Motif Atlas

Homologous match to HL_4WF9_057

Geometric discrepancy: 0.1793

The information below is about HL_4WF9_057

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5UYP|1|01|U|2528
5UYP|1|01|G|2529
5UYP|1|01|A|2530
5UYP|1|01|A|2531
5UYP|1|01|G|2532
5UYP|1|01|U|2533
5UYP|1|01|A|2534
5UYP|1|01|G|2535

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 08

50S ribosomal protein L6

Chain 34

50S ribosomal protein L36