HL_5UYP_065
3D structure
- PDB id
- 5UYP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUGAAAGCAUCUAAG
- Length
- 15 nucleotides
- Bulged bases
- 5UYP|1|01|G|2751
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UYP_065 not in the Motif Atlas
- Homologous match to HL_4WF9_062
- Geometric discrepancy: 0.1324
- The information below is about HL_4WF9_062
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_53269.1
- Basepair signature
- cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW
- Number of instances in this motif group
- 11
Unit IDs
5UYP|1|01|C|2745
5UYP|1|01|U|2746
5UYP|1|01|G|2747
5UYP|1|01|A|2748
5UYP|1|01|A|2749
5UYP|1|01|A|2750
5UYP|1|01|G|2751
5UYP|1|01|C|2752
5UYP|1|01|A|2753
5UYP|1|01|U|2754
5UYP|1|01|C|2755
5UYP|1|01|U|2756
5UYP|1|01|A|2757
5UYP|1|01|A|2758
5UYP|1|01|G|2759
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 08
- 50S ribosomal protein L6
- Chain 12
- 50S ribosomal protein L13
- Chain 34
- 50S ribosomal protein L36
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