HL_5UYP_067
3D structure
- PDB id
- 5UYP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GAAGACGAC
- Length
- 9 nucleotides
- Bulged bases
- 5UYP|1|01|A|2820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UYP_067 not in the Motif Atlas
- Homologous match to HL_5J7L_201
- Geometric discrepancy: 0.1184
- The information below is about HL_5J7L_201
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_64690.6
- Basepair signature
- cWW-cSW-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
5UYP|1|01|G|2819
5UYP|1|01|A|2820
5UYP|1|01|A|2821
5UYP|1|01|G|2822
5UYP|1|01|A|2823
5UYP|1|01|C|2824
5UYP|1|01|G|2825
5UYP|1|01|A|2826
5UYP|1|01|C|2827
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 05
- 50S ribosomal protein L3
- Chain 16
- 50S ribosomal protein L17
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