HL_5UYP_069
3D structure
- PDB id
- 5UYP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- ACCCCAUGCCGAACU
- Length
- 15 nucleotides
- Bulged bases
- 5UYP|1|02|G|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UYP_069 not in the Motif Atlas
- Homologous match to HL_5J7L_215
- Geometric discrepancy: 0.2325
- The information below is about HL_5J7L_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5UYP|1|02|A|34
5UYP|1|02|C|35
5UYP|1|02|C|36
5UYP|1|02|C|37
5UYP|1|02|C|38
5UYP|1|02|A|39
5UYP|1|02|U|40
5UYP|1|02|G|41
5UYP|1|02|C|42
5UYP|1|02|C|43
5UYP|1|02|G|44
5UYP|1|02|A|45
5UYP|1|02|A|46
5UYP|1|02|C|47
5UYP|1|02|U|48
Current chains
- Chain 02
- 5S ribosomal RNA
Nearby chains
- Chain 01
- Large subunit ribosomal RNA; LSU rRNA
- Chain 07
- 50S ribosomal protein L5
- Chain 17
- 50S ribosomal protein L18
- Chain 29
- 50S ribosomal protein L31
Coloring options: