HL_5UYP_077
3D structure
- PDB id
- 5UYP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CUGAGAGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UYP_077 not in the Motif Atlas
- Geometric match to HL_7A0S_056
- Geometric discrepancy: 0.2107
- The information below is about HL_7A0S_056
- Detailed Annotation
- GNRA with extra cWW
- Broad Annotation
- GNRA with extra cWW
- Motif group
- HL_45359.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
5UYP|1|A|C|295
5UYP|1|A|U|296
5UYP|1|A|G|297
5UYP|1|A|A|298
5UYP|1|A|G|299
5UYP|1|A|A|300
5UYP|1|A|G|301
5UYP|1|A|G|302
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain D
- 30S ribosomal protein S4
- Chain E
- 30S ribosomal protein S5
- Chain L
- 30S ribosomal protein S12
- Chain Q
- 30S ribosomal protein S17
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