HL_5UYP_082

3D structure

PDB id

5UYP (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, open 30S (Structure II-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

5UYP|1|A|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYP_082 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2071

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5UYP|1|A|G|462
5UYP|1|A|U|463
5UYP|1|A|U|464
5UYP|1|A|A|465
5UYP|1|A|A|466
5UYP|1|A|U|467
5UYP|1|A|A|468
5UYP|1|A|C|469
5UYP|1|A|C|470

Current chains

Chain A

16S ribosomal RNA

Nearby chains