HL_5UYQ_001
3D structure
- PDB id
- 5UYQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGCUAAUCUG
- Length
- 10 nucleotides
- Bulged bases
- 5UYQ|1|01|G|60
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UYQ_001 not in the Motif Atlas
- Homologous match to HL_5J7L_134
- Geometric discrepancy: 0.3034
- The information below is about HL_5J7L_134
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35677.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
5UYQ|1|01|U|59
5UYQ|1|01|G|60
5UYQ|1|01|C|61
5UYQ|1|01|U|62
5UYQ|1|01|A|63
5UYQ|1|01|A|64
5UYQ|1|01|U|65
5UYQ|1|01|C|66
5UYQ|1|01|U|67
5UYQ|1|01|G|68
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 22
- 50S ribosomal protein L23
- Chain 27
- 50S ribosomal protein L29
- Chain 32
- 50S ribosomal protein L34
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