HL_5UYQ_059

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYQ_059 not in the Motif Atlas

Homologous match to HL_4WF9_056

Geometric discrepancy: 0.155

The information below is about HL_4WF9_056

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5UYQ|1|01|A|2471
5UYQ|1|01|G|2472
5UYQ|1|01|U|2473
5UYQ|1|01|U|2474
5UYQ|1|01|C|2475
5UYQ|1|01|A|2476
5UYQ|1|01|U|2477
5UYQ|1|01|A|2478
5UYQ|1|01|U|2479

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 08

50S ribosomal protein L6

Chain 34

50S ribosomal protein L36

Chain Y

Transfer RNA; tRNA