HL_5UYQ_062

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYQ_062 not in the Motif Atlas

Homologous match to HL_7RQB_063

Geometric discrepancy: 0.1311

The information below is about HL_7RQB_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

5UYQ|1|01|C|2594
5UYQ|1|01|G|2595
5UYQ|1|01|U|2596
5UYQ|1|01|G|2597
5UYQ|1|01|A|2598
5UYQ|1|01|G|2599

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 04

50S ribosomal protein L2

Chain W

Transfer RNA; tRNA