HL_5UYQ_065

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5UYQ|1|01|G|2751

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYQ_065 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.0966

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

5UYQ|1|01|C|2745
5UYQ|1|01|U|2746
5UYQ|1|01|G|2747
5UYQ|1|01|A|2748
5UYQ|1|01|A|2749
5UYQ|1|01|A|2750
5UYQ|1|01|G|2751
5UYQ|1|01|C|2752
5UYQ|1|01|A|2753
5UYQ|1|01|U|2754
5UYQ|1|01|C|2755
5UYQ|1|01|U|2756
5UYQ|1|01|A|2757
5UYQ|1|01|A|2758
5UYQ|1|01|G|2759

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 08

50S ribosomal protein L6

Chain 12

50S ribosomal protein L13

Chain 34

50S ribosomal protein L36