HL_5UYQ_066

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

5UYQ|1|01|U|2797, 5UYQ|1|01|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYQ_066 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.5465

The information below is about HL_5J7L_200

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5UYQ|1|01|C|2795
5UYQ|1|01|U|2796
5UYQ|1|01|U|2797
5UYQ|1|01|U|2798
5UYQ|1|01|A|2799
5UYQ|1|01|A|2800
5UYQ|1|01|G|2801

Current chains

Chain 01

23S ribosomal RNA

Nearby chains