HL_5UYQ_067

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

5UYQ|1|01|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYQ_067 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1412

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5UYQ|1|01|G|2819
5UYQ|1|01|A|2820
5UYQ|1|01|A|2821
5UYQ|1|01|G|2822
5UYQ|1|01|A|2823
5UYQ|1|01|C|2824
5UYQ|1|01|G|2825
5UYQ|1|01|A|2826
5UYQ|1|01|C|2827

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 05

50S ribosomal protein L3

Chain 16

50S ribosomal protein L17

Chain 18

50S ribosomal protein L19