HL_5UYQ_075

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

5UYQ|1|A|U|209, 5UYQ|1|A|C|210

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYQ_075 not in the Motif Atlas

Geometric match to HL_4WSB_001

Geometric discrepancy: 0.3406

The information below is about HL_4WSB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

5UYQ|1|A|C|206
5UYQ|1|A|C|207
5UYQ|1|A|U|208
5UYQ|1|A|U|209
5UYQ|1|A|C|210
5UYQ|1|A|G|211
5UYQ|1|A|G|212
5UYQ|1|A|G|213

Current chains

Chain A

16S ribosomal RNA

Nearby chains