HL_5UYQ_078

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYQ_078 not in the Motif Atlas

Homologous match to HL_4LFB_008

Geometric discrepancy: 0.1486

The information below is about HL_4LFB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5UYQ|1|A|A|320
5UYQ|1|A|A|321
5UYQ|1|A|C|322
5UYQ|1|A|U|323
5UYQ|1|A|G|324
5UYQ|1|A|A|325
5UYQ|1|A|G|326
5UYQ|1|A|A|327
5UYQ|1|A|C|328
5UYQ|1|A|A|329
5UYQ|1|A|C|330
5UYQ|1|A|G|331
5UYQ|1|A|G|332
5UYQ|1|A|U|333

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20