HL_5UYQ_099

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYQ_099 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.1272

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.3

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5UYQ|1|A|C|1314
5UYQ|1|A|U|1315
5UYQ|1|A|G|1316
5UYQ|1|A|C|1317
5UYQ|1|A|A|1318
5UYQ|1|A|A|1319
5UYQ|1|A|C|1320
5UYQ|1|A|U|1321
5UYQ|1|A|C|1322
5UYQ|1|A|G|1323

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain M

30S ribosomal protein S13

Chain N

30S ribosomal protein S14

Chain S

30S ribosomal protein S19