3D structure

PDB id
5UYQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CUUCGG
Length
6 nucleotides
Bulged bases
5UYQ|1|A|U|1451
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5UYQ_101 not in the Motif Atlas
Homologous match to HL_5J7L_030
Geometric discrepancy: 0.5091
The information below is about HL_5J7L_030
Detailed Annotation
UNCG
Broad Annotation
No text annotation
Motif group
HL_34617.5
Basepair signature
cWW-tSW-F
Number of instances in this motif group
57

Unit IDs

5UYQ|1|A|C|1449
5UYQ|1|A|U|1450
5UYQ|1|A|U|1451
5UYQ|1|A|C|1452
5UYQ|1|A|G|1453
5UYQ|1|A|G|1454

Current chains

Chain A
16S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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