HL_5UYQ_110
3D structure
- PDB id
- 5UYQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- ACU(U8U)UUAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: U8U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UYQ_110 not in the Motif Atlas
- Homologous match to HL_5IBB_210
- Geometric discrepancy: 0.2268
- The information below is about HL_5IBB_210
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.5
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 50
Unit IDs
5UYQ|1|Y|A|31
5UYQ|1|Y|C|32
5UYQ|1|Y|U|33
5UYQ|1|Y|U8U|34
5UYQ|1|Y|U|35
5UYQ|1|Y|U|36
5UYQ|1|Y|A|37
5UYQ|1|Y|A|38
5UYQ|1|Y|U|39
Current chains
- Chain Y
- tRNALys
Nearby chains
- Chain 01
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain L
- 30S ribosomal protein S12
- Chain V
- mRNA
Coloring options: