HL_5UYQ_111
3D structure
- PDB id
- 5UYQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUUCGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UYQ_111 not in the Motif Atlas
- Homologous match to HL_5AXM_003
- Geometric discrepancy: 0.1925
- The information below is about HL_5AXM_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
5UYQ|1|Y|G|53
5UYQ|1|Y|U|54
5UYQ|1|Y|U|55
5UYQ|1|Y|C|56
5UYQ|1|Y|G|57
5UYQ|1|Y|A|58
5UYQ|1|Y|A|59
5UYQ|1|Y|U|60
5UYQ|1|Y|C|61
Current chains
- Chain Y
- tRNALys
Nearby chains
- Chain 01
- Large subunit ribosomal RNA; LSU rRNA
- Chain 08
- 50S ribosomal protein L6
- Chain Z
- Elongation factor Tu 2
Coloring options: