HL_5UYQ_113
3D structure
- PDB id
- 5UYQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGAUGCAACGCG
- Length
- 12 nucleotides
- Bulged bases
- 5UYQ|1|A|G|971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UYQ_113 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.2327
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_27483.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5UYQ|1|A|C|962
5UYQ|1|A|G|963
5UYQ|1|A|A|964
5UYQ|1|A|U|965
5UYQ|1|A|G|966
5UYQ|1|A|C|967
5UYQ|1|A|A|968
5UYQ|1|A|A|969
5UYQ|1|A|C|970
5UYQ|1|A|G|971
5UYQ|1|A|C|972
5UYQ|1|A|G|973
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain I
- 30S ribosomal protein S9
- Chain J
- 30S ribosomal protein S10
- Chain M
- 30S ribosomal protein S13
- Chain N
- 30S ribosomal protein S14
- Chain W
- Transfer RNA; tRNA
- Chain Y
- Transfer RNA; tRNA
Coloring options: