HL_5UYQ_114

3D structure

PDB id

5UYQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome bound with near-cognate ternary complex base-paired to A site codon, closed 30S (Structure III-nc)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UYQ_114 not in the Motif Atlas

Homologous match to HL_9DFE_198

Geometric discrepancy: 0.189

The information below is about HL_9DFE_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5UYQ|1|01|G|2304
5UYQ|1|01|U|2305
5UYQ|1|01|C|2306
5UYQ|1|01|G|2307
5UYQ|1|01|G|2308
5UYQ|1|01|A|2309
5UYQ|1|01|C|2310
5UYQ|1|01|A|2311
5UYQ|1|01|U|2312

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 07

50S ribosomal protein L5