HL_5UZZ_005
3D structure
- PDB id
- 5UZZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of wild type pre-miR21 apical loop
- Experimental method
- SOLUTION NMR
- Resolution
Loop
- Sequence
- GACUGUUGAAUCUCAUGGC
- Length
- 19 nucleotides
- Bulged bases
- 5UZZ|5|A|U|33, 5UZZ|5|A|A|37
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5UZZ_005 not in the Motif Atlas
- Geometric match to HL_4WF9_011
- Geometric discrepancy: 0.33
- The information below is about HL_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.9
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
5UZZ|5|A|G|28
5UZZ|5|A|A|29
5UZZ|5|A|C|30
5UZZ|5|A|U|31
5UZZ|5|A|G|32
5UZZ|5|A|U|33
5UZZ|5|A|U|34
5UZZ|5|A|G|35
5UZZ|5|A|A|36
5UZZ|5|A|A|37
5UZZ|5|A|U|38
5UZZ|5|A|C|39
5UZZ|5|A|U|40
5UZZ|5|A|C|41
5UZZ|5|A|A|42
5UZZ|5|A|U|43
5UZZ|5|A|G|44
5UZZ|5|A|G|45
5UZZ|5|A|C|46
Current chains
- Chain A
- pre-miR21
Nearby chains
- Chain B
- 14-mer Peptide
Coloring options: