HL_5UZZ_009

3D structure

PDB id

5UZZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of wild type pre-miR21 apical loop

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

GACUGUUGAAUCUCAUGGC

Length

19 nucleotides

Bulged bases

5UZZ|9|A|G|35, 5UZZ|9|A|A|36, 5UZZ|9|A|A|37

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5UZZ_009 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.228

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

5UZZ|9|A|G|28
5UZZ|9|A|A|29
5UZZ|9|A|C|30
5UZZ|9|A|U|31
5UZZ|9|A|G|32
5UZZ|9|A|U|33
5UZZ|9|A|U|34
5UZZ|9|A|G|35
5UZZ|9|A|A|36
5UZZ|9|A|A|37
5UZZ|9|A|U|38
5UZZ|9|A|C|39
5UZZ|9|A|U|40
5UZZ|9|A|C|41
5UZZ|9|A|A|42
5UZZ|9|A|U|43
5UZZ|9|A|G|44
5UZZ|9|A|G|45
5UZZ|9|A|C|46

Current chains

Chain A

pre-miR21

Nearby chains

Chain B

14-mer Peptide