HL_5V3F_001

3D structure

PDB id

5V3F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Co-crystal structure of the fluorogenic RNA Mango

Experimental method

X-RAY DIFFRACTION

Resolution

1.7 Å

Loop

Sequence

CGAAGGGACGGUGCGGAGAGGAGAG

Length

25 nucleotides

Bulged bases (A, C, G, U)

11A, 12C, 15U, 17C, 20A, 25A

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_12758.2

Basepair signature

cWW-tSH-F-cHW-cWH-F-F-tSH-cWH-cHW-cWH-cHW-cWH-cWH-cHW-tSH-cHW-cWH-F-cWH

Number of instances in this motif group

3

Unit IDs

5V3F|1|A|C|4
5V3F|1|A|G|5
5V3F|1|A|A|6
5V3F|1|A|A|7
5V3F|1|A|G|8
5V3F|1|A|G|9
5V3F|1|A|G|10
5V3F|1|A|A|11
5V3F|1|A|C|12
5V3F|1|A|G|13
5V3F|1|A|G|14
5V3F|1|A|U|15
5V3F|1|A|G|16
5V3F|1|A|C|17
5V3F|1|A|G|18
5V3F|1|A|G|19
5V3F|1|A|A|20
5V3F|1|A|G|21
5V3F|1|A|A|22
5V3F|1|A|G|23
5V3F|1|A|G|24
5V3F|1|A|A|25
5V3F|1|A|G|26
5V3F|1|A|A|27
5V3F|1|A|G|28

Current chains

Chain A

RNA (31-MER)

Nearby chains

Chain B

RNA (31-MER)