HL_5V8I_008
3D structure
- PDB id
- 5V8I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus 70S ribosome lacking ribosomal protein uS17
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.25 Å
Loop
- Sequence
- GCUUGUC
- Length
- 7 nucleotides
- Bulged bases
- 5V8I|1|1A|U|271|||K, 5V8I|1|1A|U|271|||N
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5V8I_008 not in the Motif Atlas
- Geometric match to HL_5J7L_018
- Geometric discrepancy: 0.2837
- The information below is about HL_5J7L_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_37344.1
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
5V8I|1|1A|G|271|||I
5V8I|1|1A|C|271|||J
5V8I|1|1A|U|271|||K
5V8I|1|1A|U|271|||L
5V8I|1|1A|G|271|||M
5V8I|1|1A|U|271|||N
5V8I|1|1A|C|271|||O
Current chains
- Chain 1A
- 23S Ribosomal RNA
Nearby chains
- Chain 11
- 50S ribosomal protein L28
- Chain 1I
- 50S ribosomal protein L9
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