HL_5V8I_028

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GUUGGCUUAGAAGCAGCCAUC

Length

21 nucleotides

Bulged bases

5V8I|1|1A|C|1076

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V8I|1|1A|G|1059
5V8I|1|1A|U|1060
5V8I|1|1A|U|1061
5V8I|1|1A|G|1062
5V8I|1|1A|G|1063
5V8I|1|1A|C|1064
5V8I|1|1A|U|1065
5V8I|1|1A|U|1066
5V8I|1|1A|A|1067
5V8I|1|1A|G|1068
5V8I|1|1A|A|1069
5V8I|1|1A|A|1070
5V8I|1|1A|G|1071
5V8I|1|1A|C|1072
5V8I|1|1A|A|1073
5V8I|1|1A|G|1074
5V8I|1|1A|C|1075
5V8I|1|1A|C|1076
5V8I|1|1A|A|1077
5V8I|1|1A|U|1078
5V8I|1|1A|C|1079

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1Q

50S ribosomal protein L16

Chain 1Z

50S ribosomal protein L25