HL_5V8I_067

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

5V8I|1|1A|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V8I_067 not in the Motif Atlas

Homologous match to HL_4WF9_064

Geometric discrepancy: 0.1297

The information below is about HL_4WF9_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5V8I|1|1A|G|2819
5V8I|1|1A|A|2820
5V8I|1|1A|A|2821
5V8I|1|1A|G|2822
5V8I|1|1A|A|2823
5V8I|1|1A|C|2824
5V8I|1|1A|G|2825
5V8I|1|1A|A|2826
5V8I|1|1A|C|2827

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1E

50S ribosomal protein L3

Chain 1R

50S ribosomal protein L17

Chain 1T

50S ribosomal protein L19