HL_5V8I_108

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

5V8I|1|2A|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V8I_108 not in the Motif Atlas

Geometric match to HL_5J7L_139

Geometric discrepancy: 0.0591

The information below is about HL_5J7L_139

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5V8I|1|2A|G|194
5V8I|1|2A|A|195
5V8I|1|2A|A|196
5V8I|1|2A|A|197
5V8I|1|2A|C|198
5V8I|1|2A|A|199
5V8I|1|2A|U|200
5V8I|1|2A|C|201

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 21

50S ribosomal protein L28

Chain 2P

50S ribosomal protein L15