HL_5V8I_154

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CCUCCGGG

Length

8 nucleotides

Bulged bases

5V8I|1|2A|C|2145

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V8I_154 not in the Motif Atlas

Geometric match to HL_5ID6_001

Geometric discrepancy: 0.2732

The information below is about HL_5ID6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

5V8I|1|2A|C|2142
5V8I|1|2A|C|2143
5V8I|1|2A|U|2144
5V8I|1|2A|C|2145
5V8I|1|2A|C|2146
5V8I|1|2A|G|2147
5V8I|1|2A|G|2148
5V8I|1|2A|G|2149

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains