HL_5V8I_158

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

GGACGGAAAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V8I_158 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.1231

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5V8I|1|2A|G|2303
5V8I|1|2A|G|2304
5V8I|1|2A|A|2305
5V8I|1|2A|C|2306
5V8I|1|2A|G|2307
5V8I|1|2A|G|2308
5V8I|1|2A|A|2309
5V8I|1|2A|A|2310
5V8I|1|2A|A|2311
5V8I|1|2A|U|2312
5V8I|1|2A|C|2313

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2G

50S ribosomal protein L5