HL_5V8I_197

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CCGCGAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V8I_197 not in the Motif Atlas

Homologous match to HL_6CZR_094

Geometric discrepancy: 0.5098

The information below is about HL_6CZR_094

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V8I|1|2a|C|1029
5V8I|1|2a|C|1030
5V8I|1|2a|G|1030|||A
5V8I|1|2a|C|1030|||B
5V8I|1|2a|G|1030|||C
5V8I|1|2a|A|1030|||D
5V8I|1|2a|G|1031
5V8I|1|2a|G|1032

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains