HL_5V8I_208

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUAGUACGAGAGGACCG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5V8I|1|1A|C|2652
5V8I|1|1A|U|2653
5V8I|1|1A|A|2654
5V8I|1|1A|G|2655
5V8I|1|1A|U|2656
5V8I|1|1A|A|2657
5V8I|1|1A|C|2658
5V8I|1|1A|G|2659
5V8I|1|1A|A|2660
5V8I|1|1A|G|2661
5V8I|1|1A|A|2662
5V8I|1|1A|G|2663
5V8I|1|1A|G|2664
5V8I|1|1A|A|2665
5V8I|1|1A|C|2666
5V8I|1|1A|C|2667
5V8I|1|1A|G|2668

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1H

50S ribosomal protein L6