HL_5V8I_213

3D structure

PDB id

5V8I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S ribosome lacking ribosomal protein uS17

Experimental method

X-RAY DIFFRACTION

Resolution

3.25 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

5V8I|1|2A|A|1067, 5V8I|1|2A|G|1068, 5V8I|1|2A|A|1070, 5V8I|1|2A|G|1071, 5V8I|1|2A|C|1072

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V8I_213 not in the Motif Atlas

Geometric match to HL_1GID_008

Geometric discrepancy: 0.2166

The information below is about HL_1GID_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50621.1

Basepair signature

cWW-F

Number of instances in this motif group

2

Unit IDs

5V8I|1|2A|C|1064
5V8I|1|2A|U|1065
5V8I|1|2A|U|1066
5V8I|1|2A|A|1067
5V8I|1|2A|G|1068
5V8I|1|2A|A|1069
5V8I|1|2A|A|1070
5V8I|1|2A|G|1071
5V8I|1|2A|C|1072
5V8I|1|2A|A|1073
5V8I|1|2A|G|1074

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2Q

50S ribosomal protein L16