HL_5V93_009

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CCGGGUAGGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_009 not in the Motif Atlas

Geometric match to HL_2JLT_001

Geometric discrepancy: 0.3658

The information below is about HL_2JLT_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_14856.1

Basepair signature

cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

5V93|1|A|C|291
5V93|1|A|C|292
5V93|1|A|G|293
5V93|1|A|G|294
5V93|1|A|G|295
5V93|1|A|U|296
5V93|1|A|A|297
5V93|1|A|G|298
5V93|1|A|G|299
5V93|1|A|G|300

Current chains

Chain A

23S rRNA

Nearby chains