HL_5V93_011

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CUGGGAUG

Length

8 nucleotides

Bulged bases

5V93|1|A|U|394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_011 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1511

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

5V93|1|A|C|388
5V93|1|A|U|389
5V93|1|A|G|390
5V93|1|A|G|391
5V93|1|A|G|392
5V93|1|A|A|393
5V93|1|A|U|394
5V93|1|A|G|395

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L24