HL_5V93_020

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GCGAAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_020 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3692

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_87268.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5V93|1|A|G|732
5V93|1|A|C|733
5V93|1|A|G|734
5V93|1|A|A|735
5V93|1|A|A|736
5V93|1|A|A|737
5V93|1|A|G|738
5V93|1|A|C|739

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain L

50S ribosomal protein L15