HL_5V93_028

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAUAAGC

Length

8 nucleotides

Bulged bases

5V93|1|A|U|1086, 5V93|1|A|G|1089

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_028 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.2368

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5V93|1|A|G|1083
5V93|1|A|G|1084
5V93|1|A|A|1085
5V93|1|A|U|1086
5V93|1|A|A|1087
5V93|1|A|A|1088
5V93|1|A|G|1089
5V93|1|A|C|1090

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16