HL_5V93_033

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGUGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5V93_033 not in the Motif Atlas

Homologous match to HL_7A0S_031

Geometric discrepancy: 0.2842

The information below is about HL_7A0S_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5V93|1|A|G|1353
5V93|1|A|G|1354
5V93|1|A|U|1355
5V93|1|A|G|1356
5V93|1|A|A|1357
5V93|1|A|C|1358

Current chains

Chain A

23S rRNA

Nearby chains

Chain L

50S ribosomal protein L15

Chain Q

50S ribosomal protein L20

Chain R

LSU ribosomal protein L21p